HiPERCAM pipeline change log from 0.22.0 to 1.0.0

List of changes from git, newest first, with the commit keys linked to github:

• ced01dcb4ecd4eff0e35e90e2b42a2e9c58c8455 documentation fixes

• ba4555460e75f688de720bda31f3a2035b05de7f bugfixes following recent changes

• dcc31f539c04577e21809b14e8ccc742080202d4 fitting.py – made error message more explicit

• ab352f43a74e99bed37aad56f789e8619e1c5d1f more fringe-related doc updates

• 588034de0bac0db4839938966fc86deb0bbaa3eb nrtplot – update time can now be specified

• 39929a17bed45a50c326acbc56d10c9052746162 fringing documentation updates

• 587cd9ac14035c2392c1028d2d5eea452131465b knock on changes due to reconfiguration of fitting.py

• 09833e6c2f5f63631e5f15a4b0c3446cd0023292 setfringe – made warnings filter more specific

• 77267ab29e25f752f6198e3a37b295390aec7e6f fitting – changed how uncertainties are passed through

• 03783f6288a9702211f593f9368b1746b130d592 fitting – enforce initial high threshold fit

• 9633a6ad1b80da6ae573293c71d8bf64c9d15bce nrtplot – bug setting direct intensity limits

• d2b13e3929f7582e2ec4ab1a462d30e15587c5b1 grab.py – suppressed fringe verbose output for bad frames

• ff3d20c0d0671f836a034188950d5c05dd0fa408 nrtplot – changed fringe to fmap

• 2c43121ab96b5e31f5fe22d9c2948bf4aefbcdee reduction.py – bug setting rmax=rmin

• 4a4b70d8c2612a0a907366e22a47a79cf3e4c8f7 setaper – aperture file tracks name of frame

• 95ec7d479361ef9f44b0b8f92fc79057fb193404 genred.py – prevented clash of parameters

• df191e3fe5f3996a924d613a745fda9f484ba741 telescope.rst – added reference to nrtplot

• 654bd76e31650e9a74b33c4405fb6af978480252 reduction.rst – doc update

• 7586c72ee5307d3c855ffa3c469c1e3e9a9e605d multiple changes for fringe correction in reduction.

• 64f77f77393d50ade12e39437d306480ce9b980c grab.py – smallchange to bias exposure

• 5d0c5193a772b26aac4b8172a0aa12b3e90a99f9 now assume file list files are already corrected

• 70412ff862bdf63a3af8a350a9cc34ff54ebee7d nrtplot – added range check parameters

• 75be981297faaf43fd8efb4c86d867752edd2184 utils – temp_dir added

• 0d9bf62bbd260179feaf8a655978c1bc82547aa3 removed redundant imports

• b32013bc480864f340d89e1dd736b380bce26194 multiple – updated for changes to grab

• 2f43f8ad00c4547ea099803d3301956ce752a562 grab.py – added flat-fielding, dark, fringe correction

• 848f4cdbf3b2fb1a101ee144abed8fff550497d3 fringe.py – added verbose option to scale

• 0644f7c21606308a3a8c15c32134485e234a47e1 genred et cl – added range limit for fringe ratios

• 9d9ea62483c739b8884b851cb08fea78730eebef setfringe – now reports values of differences.

• b0bb94cb6a997f1592ab10c064fc5e4f2df94476 mpl.py – modified display of FringePair

• 3b958c3d8518564db684e2fdbd6cdc2bdb831538 mpl – cleaner way to display FringePairs

• 923a624897bb793743b4752982151052a24906fb fringe.py – switched to medians, added range

• d631d67278b26067e53a4c8a6b890ba748b9eaef reduction.py – added fringe parameters to Rfile

• dde4c655e79888eef3cdc1be8fb2ad6d5fda8fd3 rupdate.py – revised updater script

• 0c6de29346d9f7205bfa4f060bf3de4f29ad8b5b starting updates for fringing to reduce

• 6e64ce55019908b3922261c718acd3c1565f2662 nrtplot – micro change to a prompt

• e3cc67a686a65d7ea8fda61f1a2a050563ff6bd6 doc updates

• d397c954e9217dc68e7daacfd14ffbec92046866 makefringe – added scaling of fringe amplitudes

• 6ceb6495c641d77030b71c57494cd664cd41e2c0 fringe.py – added option to store reference values

• a844b521bc9fcf2e732e2377ce696a932bd6ec83 nrtplot – added fringe correction.

• 86f7fd0b884410387c7b99688e98c5370fadbad5 fringe.py – adjusted to allow larger regions for averaging

• 4c6b4d553faca3874a55c0f3eed728d9e7360f0c MCCD.crop – now doesn’t pass through all CCDs

• e344b7fb997556d40a5b298406abbed93cffc915 fringe.py – difference calculation added

• 525f96d0f284e11192939527d43ca919bd24d44b window.py – small additional doc

• 32a9c11a34fe014172ec39ad30a67a57c9423df1 setfringe – re-organised code a bit

• 9eb2da1dff9a26b7732c87978dbfd710b6a501e4 setdefect – reformatting

• c2e8c9bb31fa361000aa86b5bcc472f9fdd62840 mply.py – mode to pFringePair

• 952eb958c94e07709d4e6809cabdbe53df938b60 fringe.py fixed dustance, added methods

• 1323022269a1a75f574d045ce58027903953c7f4 fringing bug fixing; several.

• c86436ac6ad9ee5e9e8e33bb02f71149bb4895c4 setdefect – docs needed fixing

• 1f76aff27060fe592494222f5e04e98e923cf835 makeflat – fixed bug removing CCDs

• dc589997835a446023e637a266fbe1ad8afa9c5d fringging code, first implementation

• c4ad845df8ade1ac4044c9c415567321d84c4663 spooler – HcamListSpoolwas destroying the list

• c58d6a0bee22eea3d19b26b35430651c74cd0984 Merge branch ‘trm-dev’ into fringes

• 98bc1d6070c83a33f40f02fd8d6a66e7b17a75a4 jtrawl – minor bug fix

• f4e4a18817bbbcf663b1e400c0cf6efd523dfce3 jtrawl – extra check added

• eb34a40550123f7e3597e60103b7f0bad4899a7d jtrawl – crude script to find junk data

• 486c04dd8b66c3320a2c06ce998c9f64e352e6a4 hmeta – altered to work per run

• 821efb4fa750e93cc6716439373131a067182a29 nrtplot – initialisation fix

• aa4e06d8d2b4e76158a49c36157b1b7535b56d1b hlogger.py – got number of cols right

• e112c9f97413ac590b6fe2aa7a17d9b316232e45 more ulogger stuff removed

• 0920651be1780a17ca8e13c28dc8fc641261f2f2 ulogger is no more

• 5f917b1d57f99a21ebedef8e8bf4840c2ad2c27d big series of changes to hlogger, ulogger

• 0d2d8a0f143fc9bba61eac9aba16a418f4cf26b3 ulogger,py – changes to include hipercam

• 2161cd7ed40daad5dbc10cc5edd9aa510a0024e6 ucam.py – doc update

• 520cb536730efe8af58f3506aef65e276f88402c hcam.py – updates for logging

• 7dffd428a29de150bfbc5c396ac0068670cc75fa hcam.py – timing flag bug fix

• 57043518ddf96c2af7815b6206a2957d1fa96a16 couple of screenshots for docs

• 87f403625406a10d8029f21e3702ae219d646c07 hlogger – expanded run directory types

• bd7ccb887ebaf966e89fafd6b27947dd1fff638f nrplot more responsive plots

• 890eecbdd858885c553c42fa98f91501e61458bd window.py – copy bug

• 1fd673fdba1decb2a3462557d3cce148c6b65008 spooler.py – extra update option added

• 6cacbef4555f8c690069cfae9215424933b1ac7d joinup.py – doc update

• b5aad8ed6bf73664c2278896eb9f1be0e296030e fitting.py – better reporting of the counts

• 3c3cbea12932a11e83e1ed755b64803197d867b7 doc updates

• 36cdb33770d0c6ad19e7d8e7a7463f7e59bc6e79 usual series of doc updates for new commands

• 7c3153b7c86819453faa15d79c31e9a632737dcf commands.rst – doc update

• 466e831f90563a4d1a33d79ac10fbdd981ffc505 joinup – reduced nmax, dmax lower limits

• 3804b466a8fe4c56c6ad8a3eb55353856b10c9c7 joinup – added safety checks nmax, dmax

• e3949873e4d60b82725cbaeb5070faa32491bccd nrtplot – can now save image display size

• e1774e82d5cd4e054fb312efa3f4757f10da4be9 joinup – added check on illegal unit16 conversion

• c465c05a26d0998449622704f0ecbbda15a5c30e joinup – and a bit more info added

• 08697bdd60475866bbb2d626c2a845069a53c50a joinup – improved documentation

• 3139372d344fa2cbc79307be8139422411fd9cb3 joinup - added compression and window location info

• 5940027b9b5de5d810c53c500fa9b2b79db4f361 commands.rst – modified for joinup

• 299d2d69872d72121ce586fe1500f2a2d317228b joinup – new command to convert to single HDU FITS

• cee5121e46994ef2ca345300e8cfc08688279f34 updated hipercam’s defect file.

• 27ddafed9bc2a05284f82a177dfef7ef8317285f changelog.sh – now list most recent first

• 125317500ba2bdfb561417d2e166edf003c7732a nrtplot – enhanced profile fitting capabilities

• 4b2a3080d15eac9709498f5a55d38be05d88880d makemovie – fixed memory issue

• 24a9f83d0462d5779701096be99112b0d813bb29 digest.py – fix for hipercam

• e1008d7885422d4f334e9a965505b5a286d646f9 digest.py – extended run directory names

• 871653456d2b10c383e004b7ae2cb530c8c6c1c7 makemovie – more stylistic tweaking

• 1a2e41d3fcd94047e39f6278fcbb14331c8a0e10 makemovie – location & dpi tweaks

• d488640bab03629e1428fe6a428197f02689aa93 nrtplot – fixed skewed setup window bug

• 59eb74228efa7ce9bfe1682463f2d128f06b37d9 makemovie – individual scaling of plots

• b6faa37e83de6f944c070e1538a39297670b1d78 cline – bug fix with getting list parameters

• 53999ab5cf9f121261d4f329f4a9f270792be1d6 Merge branch ‘trm-dev’

• 84499478a82e6cded3a5c5a51daa0c3b3cd11213 Merge branch ‘master’ of github.com:HiPERCAM/hipercam

• 6a213f80290fbc70956e344557b4fff085b0bafd Merge pull request #81 from HiPERCAM/fix_rulog

• 204309709565ced4bff4a02229ace0bc32b592ca many – fixed bug with default number of plot panels

• db0984ad3ae63b4d42880484cb2f68d8a9c62286 nrtplot – re-ordered inputs again

• fb2c330dec7cb43174da0fff459bcab356ceba4a makemovie – new command to help make movies

• 0c4d552d1c87a267d53ab68fd0ccdd28df65fa16 globals.rst – typo in nrtplot name

• e7c105d8342b5ea9c1e7c82b8b91f6930227e27b fix ulog reading so it is compatible with hlogs

• 6eaa295e2ffab2306652029e68a43643496c6fca news.rst fixed a few typos

• 90f2745674f3622b4b44786b8ac96c4f5fca0a2c doc string changes for sphinx

• 1377ead3be3762168f391033dea97493fc38baaa Re-organised the way I list version changes.

• 9806d89ffa6eba7fb1cee4ae7dec4da14e9f5bc7 pgp.py – bug fix with percentile problem

• dd74c75881bc8d97423a2dc7bbc71c8c796458f8 nrtplot – sets variable radius to the fwhm now

• 91b900ee89417b4afa5477f62dda031ff4946bfa latest list of changes

• 7217a1783f5be56b181752e73f4b9e778d69293a nrtplot, setaper, hplot, setdefect updated cmap prompting

• 20a6269dfb5ca4727aacc1f0735f66ded0c43baa nrtplot now prompts for a carriage rreturn before closing the plots

• 385be80591e373795eb4226f932ede0bc5b04e72 makefringe.py – initial simple version

• f20fe697ce3d11e295d3f2173e0b31f38ade662d spooler.py – doc updates

• 96a31259225005068b8a025284a5c5c34fd26993 rtplot – doc updates

• 86a67ea1a4db247b307d8f36f14ea9f72a521800 makefringe – restarted development. Included in list of commands

• 47fe2e6a0727ab113df3fd93f954dc1494e5baa7 Merge branch ‘master’ into fringes

• 4990a071686b93f1b6e0684c03307c7c87f2a46d makefringe: new script to make a fringe frame